Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKTEMKSFLKLFAQPLLVVLAFMLLYALAHAVLGFYVKKDSAPMSPNVEKSETERQNSTFSPKEEANATTTATEQNPTKDTVPPLDTATQKQEIKQEIKQEIKQEIKQEIKQEIKQEIKQETKQEQEKENKPKQNSVSPVQNDQKTPTTPLMGKKPLEYKVAVSGVNVRAFPSTKGKIIGSLIKNKSVKVLEIQNDWAEIEFSHETKGYVFLKLLKKAE |
| 3NPF Chain:A ((11-69)) | -----------------------------------------------------------------------------------------------------------------------------------------------------------SAYGVVHISVCNLREEGKFTSGMSTQALLGMPVKVLQ-YNGWYEIQTPDDYTGWVHRMVITPMS |
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General information:
TITO was launched using:
| RESULT:
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Template: 3NPF.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -28569 for 392 contacts (-72.9/contact) +
2D Compatibility (PS) -6245 + (NN) 2241 + (LL) 11764
1D Compatibility (HY) -2800 + (ID) 700
Total energy: -24309.0 ( -62.01 by residue)
QMean score : 0.479
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