Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKSIRRGDGLNVVPFIDIMLVLLAIVLSISTFIAQGKIKVSLPNAKNAEKSQPNDQKVVVISVDEHDNIFVDDKPTNLEALSAVVKQTDPKTLIDLKSDKSSRFETFISIMDILKEHNHENFSISTQAQ
1F8D Chain:A ((266-320))
-------NGVKGFSYLDGVNTWLGRTISIASRSGYEMLKV--PNALTDDKSKPTQGQTIVLNTDWSGYSGSFMDYWAEGECYRACFYVELIRGRPKEDKVWWTSNSIVSMCSSTEFLGQWDWPDGAKIE
General information:
TITO was launched using:
RESULT:
Template:
1F8D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -14135 for 300 contacts (-47.1/contact) +
2D Compatibility (PS) -5583 + (NN) 777 + (LL) 624
1D Compatibility (HY) -1600 + (ID) 750
Total energy: -20667.0 ( -68.89 by residue)
QMean score : 0.197
(partial model without unconserved sides chains):
PDB file :
Tito_1F8D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1F8D-query.scw
PDB file :
Tito_Scwrl_1F8D.pdb
: