Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MRKLIQFLFIAVVLFLVEYVLINQAAILFLVTSGIIQLCGVIIAIRLLLFDQRNTSSKVAWVAVIFILPVLGTISYLVFGRNPATRKFSTAQVKEKTKLINAIHAIPNNTNEKLPRLSKRIAHLTSIEPIKGNKIEILTNGEETFPVLLDALRKAENHIHIQYYI-FKTDAISTEIRDILVEKAKSG--VEVRFMFDGLGSSK---LGKAFLAPLKE------AGVSIHAFDPIASPWIVRTANLRNHRKIVVIDGQIGFTGGLNIG-EEYRSNTPDFRVWRDTHIKITGQAVIELQESFLNDWVYMENQAGAADGFI-S-E--SGSK--------QYFSPVDMGDEWA-----------------QVIY---------------GGPY-----DKEKWVRDSMLDLIDSAKESVWIVSPYFVP--------DEESLAVIRRVAMSGVDVRVIIPGKGDRGISFHGSNAYVKTMI------------------------EAGAKMYAYA----------DDSFVHAKAMLVDGTRAAIGTANFDVRSFRLNHELMVFLYDESEAMHHLKR-DFKKDFEDSRLFTMKDMENKPLLTRIKEVLSSLLSPIL |
1V0W Chain:A ((61-500)) | -----------------------------------------------------------------------------------------------------------------------------------------RVGTKRLLAKMTENIGNATRTVDISTLAPFPNGAFQDAIVAGLKESAAKGNKLKVRILVGAAP--HMNVIPSKYRDELTAKLGKAAENITLNVASMT----TSKTAFSWNHSKILVVDGQSALTGGINSWKDDYLDT---THPVSDVDLALTGPAAGSAGRYLDTLWTWTCQNKSNIASVWFAASGNAGCMPTMHKDTNPKA-SPATGNVPVIAVGGLGVGIKDVDPKSTFRPDLPTASDTKCVVGLHDNTNADRDYDTVNPEESALRALVASAKGHIEISQQDLNATCPPLPRYDIRLYDALAAKMAAGVKVRIVVSDPANR------GYSQIKSLSEISDTLRNRLANITGGQQAAKTAMCSNLQLATFRSSPNGKWADGHPYAQHHKLVSVDSSTFYIGSKNLYPSWL---QDFGYIVESPE-AAKQLDAKLLDPQWKYSQETATVDYA-------------------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 1V0W.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -151988 for 2657 contacts (-57.2/contact) +
2D Compatibility (PS) -36178 + (NN) -14226 + (LL) 15076
1D Compatibility (HY) -4400 + (ID) 2900
Total energy: -194616.0 ( -73.25 by residue)
QMean score : 0.521
|
|
|