Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LDYIIAAHGRYAQEVKDSCQMITGQTTNISAITFTEEMGVTDVLDAYMAVYSP---VNETAIIVDIVGGTPCNAAQMFSTK-----HPEVKVVSGLSLGLIIPLSLGE-S-------LEEAMLGAKDNIQFVEQKASHTIVSDDGEEED
3IPR Chain:A ((2-137))
LGIVIATHGALSDGAKDAATVIMGATENIETVNLNSGDDVQALGGQIKTAIENVQQGDGVLVMVDLLSASPYNQAVLVINELEPALQKKIFVVSGTNLPMVLEAINHQLLGTPIAEAAQAIVAQGKESVQAWDISM-------------
General information:
TITO was launched using:
RESULT:
Template:
3IPR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -97662 for 877 contacts (-111.4/contact) +
2D Compatibility (PS) -12953 + (NN) -1675 + (LL) 348
1D Compatibility (HY) -7600 + (ID) 1250
Total energy: -120792.0 ( -137.73 by residue)
QMean score : 0.534
(partial model without unconserved sides chains):
PDB file :
Tito_3IPR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3IPR-query.scw
PDB file :
Tito_Scwrl_3IPR.pdb
: