Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VKLPPEADYLNDETLEVYENDKKKYDQTNQLITNNSVTILLGDFCYYESAWSSRWRDNRFWIGSKVS
1ZDN Chain:A ((125-154))
---PNPESALNEEAGRLLLENYEEYAARARLLT----------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1ZDN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 12787 for 162 contacts (78.9/contact) +
2D Compatibility (PS) -3232 + (NN) -1719 + (LL) 2308
1D Compatibility (HY) -1600 + (ID) 350
Total energy: 8194.0 ( 50.58 by residue)
QMean score : 0.265
(partial model without unconserved sides chains):
PDB file :
Tito_1ZDN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1ZDN-query.scw
PDB file :
Tito_Scwrl_1ZDN.pdb
: