Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | -------MSDLFLELNGKVHSLSETFPGLSVQEVSRQSPQLSMETAEIAGTDGVIPGMTQFKPFIFS-----------AKCNLQALDIPDYHLAVREIYEFLFQRDSYYIWSDQMPGIRYEVHPKPVDFSRESDRVGLLTIEFD-----VFK---GYAESRGTSLDPMTFEVDLWQMGMNLSNRDDLFYIFKENTFRVYNAGSDRVNPLMRHELDIAMTANGTPTIHNLTTGE--SFEYQKELRKTDVLLLNNIYPLVNNRRVGKD-------TNHGIITLEKGWNDFEIKGVTDVTIAFNFPFIYR----- |
| 4NDN Chain:F ((15-323)) | IPNRRVLVTGATGLLGRAVHKEFQQ-NNWHAVGCGFRRARPKFEQVNLLDSNAVHHIIHDFQPHVIVHCAAERRPDVDAASQLNVDASGNLAKEAAAVGAFLIYISSDYVFDGTNPPYREEDIPAPLNLYGKTKLDGEKAVLENNLGAAVLRIPILYGEVEKLEESAVTVMFDKVQFSNKSANMDHWQ-------QRFPTHVKDVATVCRQLAEKRMLDPSIKGTFHWSGNEQMTKYEMACAIADAFNLPSSHLRPITDSPVLGAQRPRNAQLDCSKLETLGIGQRTPFRIGIKESLWPFLIDKRWRQTVFH |
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General information:
TITO was launched using:
| RESULT:
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Template: 4NDN.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 11463 for 1997 contacts (5.7/contact) +
2D Compatibility (PS) -26582 + (NN) 6851 + (LL) 700
1D Compatibility (HY) -2400 + (ID) 2050
Total energy: -12018.0 ( -6.02 by residue)
QMean score : 0.112
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