Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPDWDFNNPESMKAWDLASGSYAEQVSG
2YUK Chain:A ((45-65))
FPDWTTRVKQIAKLWRKASSQ-------
General information:
TITO was launched using:
RESULT:
Template:
2YUK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 3246 for 77 contacts (42.2/contact) +
2D Compatibility (PS) -2220 + (NN) -582 + (LL) 452
1D Compatibility (HY) 0 + (ID) 350
Total energy: 546.0 ( 7.09 by residue)
QMean score : 0.342
(partial model without unconserved sides chains):
PDB file :
Tito_2YUK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2YUK-query.scw
PDB file :
Tito_Scwrl_2YUK.pdb
: