Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MTMENSSNVAQSSKWKLPIMIAGFVIVVALVFYFVFEGTKNDITIVNAGEKIESRTHAKTVSEALDEAGIKVSERDEIAPGKNAEIKDGMEIKYLPARQITINDNGTKKDVWSTKANVADLLKDENITTRPQDVLNVALDTKLKNGLEVNINRAIQLSLQNGAKKDTVWTTKTKVSDLLAEKNIKLDQDDRVSPAKDSNLKEKMTVEVTYVNSKAEKKNEQVKFETVYKEDDSLNKGVEKVVQEGKNGKKVVEYKVTFENGKEKKRDVIKENVTSNKTDKVVVRGTKEKVVATPVSNVSTSSATSSSSSSASSTPSGGKTYKMESTAYSGGGTTAYGINLSANPGLKVIAVDPRIIPLGSKVWVEGYGEAIAGDTGGAIKGNIVDVYFPNESQCYSWGRRMVTVKVLN |
2LGE Chain:A ((57-122)) | ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EELAVEKVTLSTTGKAIEFAVSGGVVDGEDGVVNEPMQWVVTVYKNGKEIEKKSLVFRDGKEISTD--------------------------------------------------------------------------------------------------------------------------------------------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 2LGE.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) 10899 for 261 contacts (41.8/contact) +
2D Compatibility (PS) -6772 + (NN) 1920 + (LL) 19820
1D Compatibility (HY) -2400 + (ID) 950
Total energy: 22517.0 ( 86.27 by residue)
QMean score : 0.536
|
|
|