Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSGKPVIHEFIVVEGRDDTTAINRSV--IADTIETNGS-------ALSQETIEKIRHAQ-ELRGVIIFTDPDFPGEKIRKQIDSAVPGC--KHAFINRQDALPKAGRGLGVEHASSANIREALENFHTSGAPTEKQFISKDILVHLGLLGGVGAKERREKIGNILKIGYTNGKQLQTRLESFAISEEQLVAACQKIMQEEENE
1VDD Chain:A ((80-199))
-------RTICVVEEPGDVIALERSGEYRGLYHVLHGVLSPMNGVGPDKLHIKPLLPRVGQGMEVILATGTTVEGDATALYLQRLLEPLGAAISRIA--YGVPV--GG-SLEYTDEVTLGRALTGRQTVSKP-----------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1VDD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -22354 for 648 contacts (-34.5/contact) +
2D Compatibility (PS) -11697 + (NN) -1602 + (LL) 6408
1D Compatibility (HY) -4000 + (ID) 1050
Total energy: -34295.0 ( -52.92 by residue)
QMean score : 0.288
(partial model without unconserved sides chains):
PDB file :
Tito_1VDD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VDD-query.scw
PDB file :
Tito_Scwrl_1VDD.pdb
: