Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceLYKNYLQRTLVLLLCFILYFFTFPLGGKAYSLNNWNKPIKNSVTTKQWMSALPDTTNLAALSIPGTHDTMSYNGDITWTLTKPLAQ----TQTMSLYQQLEAGIRYIDIRAK---DN-LNIYHGPIFLNASLSGVLETITQFLKKNPKETIIMRLKDE----QNSNDSFDYRIQPLINIYKDYFYTTPRTDTSNKIPTLKDVRGKILLLSE-NHTKKPLVIN------SRKFGMQFGA-PNQVIQDDYNGPSVKTKFKEIVQTAYQA---SKADNKLFLNHISATS---LTFTPRQYAAALNNKVEQFVLNLTSEKVRGLGILIMDFPEKQTIKNIIKNNKFN
1PTD Chain:A ((6-275))------------------------------ELENWSK----------WMQPIPDSIPLARISIPGTHDSG------TFKLQNPIKQVWGMTQEYDFRYQMDHGARIFDIRGRLTDDNTIVLHHGPLYLYVTLHEFINEAKQFLKDNPSETIIMSLKKEYEDMKGAEDSFSSTFE------KKYFVDPIFLKTEGNI-KLGDARGKIVLLKRYSGSNEPGGYNNFYWPDNETFTTTVNQNANVTVQDKYK-VSYDEKVKSIKDTMDETMNNSEDLNHLYINFTSLSSGGTAWNSPYYYASYINPEIANYIKQKNPARV---GWVIQDY----------------


General information:
TITO was launched using:
RESULT:

Template: 1PTD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -90221 for 1900 contacts (-47.5/contact) +
2D Compatibility (PS) -26011 + (NN) -7356 + (LL) 4292
1D Compatibility (HY) -17600 + (ID) 4600
Total energy: -141496.0 ( -74.47 by residue)
QMean score : 0.525

(partial model without unconserved sides chains):
PDB file : Tito_1PTD.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1PTD-query.scw
PDB file : Tito_Scwrl_1PTD.pdb: