Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MICQRCGENKAVIALQQLNELGKVESLYLCENCATDEALSSEKDLVKAMDTFSEVALDFLTLLQKEENTQKEVVCENCQLSFEEFLKTNRVGCPECYSAFEAQLVPIIGRVQNGYKKHIGKVPAEVERAEGVQNEISRLQEKLAKLVKNEEFEEAAVVRDEIKALKAGGEDK
1AB4 Chain:A ((261-305))
----------------------------------------------------------------------------------------------------------------------VHEIPYQVNKA--------RLIEKIAELVKEKRVEGISALRDE-----------
General information:
TITO was launched using:
RESULT:
Template:
1AB4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -2737 for 152 contacts (-18.0/contact) +
2D Compatibility (PS) -3806 + (NN) -3120 + (LL) 10476
1D Compatibility (HY) -3200 + (ID) 750
Total energy: -3137.0 ( -20.64 by residue)
QMean score : 0.491
(partial model without unconserved sides chains):
PDB file :
Tito_1AB4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1AB4-query.scw
PDB file :
Tito_Scwrl_1AB4.pdb
: