Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LITHVIWDMGETLNTVPNTRYDHYPLDTYPEVVLRKDAKETLEKVKQLGFKQAILSNTATSDTEVIKRVLTNFGIIDYFDFIYASNSELQPGKMEKPDKTIFDFTLNELQIDKTEAVMVGNTFESDIIGANRAGIHAIWLQNPEVCLQDERQPLVAPPFVIPVWDLADVPEALLLLKKISS
1ZRN Chain:A ((89-196))
--------------------------DAYLRLAPFSEVPDSLRELKRRGLKLAILSNGS---PQSIDAVVSHAGLRDGFDHLLS----VDPVQVYKPDNRVYELAEQALGLDRSAILFVASN-AWDATGARYFGFPTCWINR---------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1ZRN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -40133 for 716 contacts (-56.1/contact) +
2D Compatibility (PS) -11505 + (NN) -5551 + (LL) 4684
1D Compatibility (HY) -6800 + (ID) 1450
Total energy: -60755.0 ( -84.85 by residue)
QMean score : 0.523
(partial model without unconserved sides chains):
PDB file :
Tito_1ZRN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1ZRN-query.scw
PDB file :
Tito_Scwrl_1ZRN.pdb
: