Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTFKGFDKDFNITDKVAVVTGAASGIGKAMAELFSEKGAYVVLLDIKEDVKDVAA---KINPSRTLALQVDITKKENIEKVVAEIKKVYPKIDILANSAGVALLE-KAEDLPEEYWDKTMELNLKGSFLMAQIIGREMIATGGGKIVNMASQASVIA--LDKHVAYCASKAAIVSMTQVLAMEWAPYNINVNAISPTVILTELGK---------KAW-AGQVGEDMKKLIPAGRFGYPEEVAACALFLVSDAASLITGENLIIDGGYTIK
3AWD Chain:A ((5-259))
-----YMEKLRLDNRVAIVTGGAQNIGLACVTALAEAGARVIIADLDEAMATKAVEDLRMEGHDVSSVVMDVTNTESVQNAVRSVHEQEGRVDILVACAGICISEVKAEDMTDGQWLKQVDINLNGMFRSCQAVGRIMLEQKQGVIVAIGSMSGLIVNRPQQQAAYNASKAGVHQYIRSLAAEWAPHGIRANAVAPTYIETTLTRFGMEKPELYDAWIAG---------TPMGRVGQPDEVASVVQFLASDAASLMTGAIVNVDAGFTV-
General information:
TITO was launched using:
RESULT:
Template:
3AWD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -143359 for 2080 contacts (-68.9/contact) +
2D Compatibility (PS) -26143 + (NN) -11034 + (LL) 1028
1D Compatibility (HY) -14000 + (ID) 4500
Total energy: -198008.0 ( -95.20 by residue)
QMean score : 0.524
(partial model without unconserved sides chains):
PDB file :
Tito_3AWD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3AWD-query.scw
PDB file :
Tito_Scwrl_3AWD.pdb
: