Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRKPLVGINMKNYINTRAQTSEWLEATIPLLGNFSDVDTFIFPSMGTLETTANLLAGTSFGFGPQNMAPEKSGPLTGEFSVESIIDLSANYVEIGHAERKNLFHEKTSEIAKKIQLALDEKITPVVCVGEGIRANDTNELKNALKKQIEALFDTIQVTQFKNVVLAYEPEWAIGKANSADTDYIESAHQALREIIRELGGDETL--VRIIYGGSVSKENAAEIVRQKNVDGLFVGRFGHKPQNFADIVSIVSKTKG
5BMW Chain:A ((35-244))
----------------------------------SKLDVVVFPVSVHYDHTRKLLQ-SKFSTGIQNVSKFGNGSYVGEVSAEIAKDLNIEYVIIGHFERRKYFHETDEDVREKLQASLKNNLKAVVCFGESLEQREQNKTIEVITKQVKAFVDLID--NFDNVILVYEPLWAIGTGKTATPEQAQLVHKEIRKIVKDTCGEKQANQIRILYGGSVNTENCSSLIQQEDIDGFLVGNASLK-ESFVDII--------
General information:
TITO was launched using:
RESULT:
Template:
5BMW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -108407 for 1617 contacts (-67.0/contact) +
2D Compatibility (PS) -22708 + (NN) -11350 + (LL) 2712
1D Compatibility (HY) -17200 + (ID) 3800
Total energy: -160753.0 ( -99.41 by residue)
QMean score : 0.520
(partial model without unconserved sides chains):
PDB file :
Tito_5BMW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5BMW-query.scw
PDB file :
Tito_Scwrl_5BMW.pdb
: