Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MVVADYLALFAVICIWGLLLINIVLIVAGYVYYLKNEARKVPEIPVEVPFVSVMVPAHNEGK-VIVKTVESLLAFDYPVDRYEIIVINDNSSD-NSAELLAAIQAKNPTRFLKIINTDNITGGKGKSNALNIGFAESRGELVAIYDADNTPERQALRILVGEITNDAKLGAVIGKFRTRNRNASWLTRFINIE-----------------TLSFQW---------MAQAGRWALFKLCTIPGTNFIVRRSLLEEIGGWDVKAV---AEDTEISFRIYMMGYRIKF----QAKAVTWEQEPQTLPVWFKQRSRWAKGNIYVILKNVPLLFKREGRRVRFDILYFLSIYFLLLTSLIVSDVLLVLYALGLVHTTLAGLSGALWLLAILLFVAGTFITLTTEKGEISFSNLLFIMLMYVTYCQLWMVVAAYGFFIFLKDTVLKRETKWYKTERF |
| 2FFV Chain:A ((63-302)) | ---------------------------------------------VDLPATSVVITFHNEARSALLRTVVSVLKKSPPHLIKEIILVDDYSNDPEDGALLGKIEK------VRVLRNDRR---EGLMRSRVRGADAAQAKVLTFLDSHCECNEHWLEPLLERVAED------------RTRVVSPIIDVINMDNFQYVGASADLKGGFDWNLVFKWDYMTPEQRRSRQGNPVAPIKTPMIAGGLFVMDKFYFEELGKYDMMMDVWGGENLEISFRVWQCGGSLEIIPCSRVGHVFRKQHPYTFP--------------------------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2FFV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -72765 for 1591 contacts (-45.7/contact) +
2D Compatibility (PS) -21785 + (NN) -5953 + (LL) 20880
1D Compatibility (HY) -13600 + (ID) 2900
Total energy: -96123.0 ( -60.42 by residue)
QMean score : 0.308
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