Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MGNWQQKWESWRDMTAAMQQEIKIEAAEKVTSYIKNDQFEEAINVIRQTENLLNELDFETKMNRVEEQLQAFTSDQEAAKSFEASQLQNIEKPSTKVSFDLSHVKSEAINQFTKRDFNLVDSNDT-HMQ-FLKGNRNFYMDIFNPEESEEYHYANLDEKCQYKNI------GFICQND-------AAAEIATKLTNEWLET-LEAPKKKFLTVNIANLNAMKQNPEVLFQ |
2VDJ Chain:A ((207-296)) | -------------------------------------------------------------------------------------------------------------------ELTLLANSEEAGVHLVIGQEGRQVFALGHSEYSCDTLKQEYERDRD-KGLNIDVPKNYFKHDNPNEKPLVRWRSHGNLLFSNWLNYYVYQE------------------------ |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 2VDJ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -7276 for 346 contacts (-21.0/contact) +
2D Compatibility (PS) -7955 + (NN) -5572 + (LL) 12092
1D Compatibility (HY) -4000 + (ID) 350
Total energy: -13061.0 ( -37.75 by residue)
QMean score : 0.206
|
|
|