Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKIIIATANKGKAKEFEKIFA-KFNIE-VATLADFPEI-GEIEETGTTFAENAALKAETVASVLNQTVIADDSGLIVDALDGAPGVYSARYAGVAHDDAKNNEKLLKNLEGVEPDKRTARFHCTLAVAT--PSEKTSFYTGEVEGVIAEQLCGTNGFGYDPLFFLPEFGLTMAEIPAEKKNEISHRANAIKQLEKDLVEVVEKVTKK
2CAR Chain:A ((9-187))
--KIVFVTGNAKKLEEVVQILGDKFPCTLVAQKIDLPEYQGEPDEISIQ-------KCQEAVRQVQGPVLVEDTCLCFNALGGLPGPYIKWFL-----EKLKPEGLHQLLAGFE--DKSAYALCTFALSTGDPSQPVRLFRGRTSGRIVAPR-GCQDFGWDPCFQPDGYEQTYAEMPKAEKNAVSHRFRALLELQE------------
General information:
TITO was launched using:
RESULT:
Template:
2CAR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -62841 for 1326 contacts (-47.4/contact) +
2D Compatibility (PS) -18397 + (NN) -4863 + (LL) 2236
1D Compatibility (HY) -10400 + (ID) 2950
Total energy: -97215.0 ( -73.31 by residue)
QMean score : 0.516
(partial model without unconserved sides chains):
PDB file :
Tito_2CAR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2CAR-query.scw
PDB file :
Tito_Scwrl_2CAR.pdb
: