Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VATKKKTFEEAIAELETIVEALENGSASLEDSLDMYQKGIELTKLCQDKLQSAEKRMAKVVTDAGEEIPFEADGE
2V6Y Chain:A ((6-45))
-----MLEDMARKYAILAVKADKEG--KVEDAITYYKKAIEVLSQII----------------------------
General information:
TITO was launched using:
RESULT:
Template:
2V6Y.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 1035 for 232 contacts (4.5/contact) +
2D Compatibility (PS) -4609 + (NN) -3115 + (LL) 2556
1D Compatibility (HY) -800 + (ID) 500
Total energy: -5433.0 ( -23.42 by residue)
QMean score : 0.557
(partial model without unconserved sides chains):
PDB file :
Tito_2V6Y.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2V6Y-query.scw
PDB file :
Tito_Scwrl_2V6Y.pdb
: