Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTKSRFFSDV-AET--SSFVFAVAGADDEVVLETIRLALKQKLGKFLLFGKKEDKT----LTANESVTWIQTDTA----------------------------EAAAQGAILAVKNKEADILVKGFIPTA-TLMHHVLKKENGLRTD-QLLSQIAIFDIPT----YHKPLLITDCAMNVAPKTKEKIAITENALAVAHQIGITNPKIALLSAVEEVTAKMP---STLEAQEVVQHFGNQISVSGPLALDVAISKEAALHKGITDSSAGEADILIAPNIETGNALYKSLVYFAGAK-VGSAVVGAKVPIVISSRNDSPENKLASFILTVRLVEK |
| 2AF4 Chain:C ((3-329)) | ----TFLEKISERAKKLNKTIALPETEDIRTLQAAAKILERGIADIVLVGNEADIKALAGDLDLSKAKIVDPKTYEKKDEYINAFYELRKHKGITLENAAEIMSDYVYFAVMMAKLGEVDGVVSGAAHSSSDTLRPAVQ-IVKTAKGAALASAFFIISVPDCEYGSDGTFLFADSGMVEMPSVEDVANIAVISAKTFELLVQDVPKVAMLSYSTKGSAKSKLTEATIASTKLAQELAPDIAIDGELQVDAAIVPKVAASKAPGSPVAGKANVFIFPDLNCGNIAYKIAQRLAKAEAYGPITQGLAKPINDLSRGCSDEDIVGAVAITCVQAA- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2AF4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -176848 for 2513 contacts (-70.4/contact) +
2D Compatibility (PS) -30517 + (NN) -13965 + (LL) 424
1D Compatibility (HY) -4800 + (ID) 3050
Total energy: -228756.0 ( -91.03 by residue)
QMean score : 0.444
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