Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-MLTATQKRFLRKEAHNIQPIFQVGKGSVSPNLIIHVKEALEARELIKISILQNCEEDKQTVAEKISARSGAEIVQVIGRTIILYKTSVNKQQIKLP--
1LN4 Chain:A ((1-98))
MDLSTKQKQHLKGLAHPLKPVVLLGSNGLTEGVLAEIEQALEHHELIKVKIATEDRETKTLIVEAIVRETGACNVQVIGKTLVLYRPT-KERKISLPLE
General information:
TITO was launched using:
RESULT:
Template:
1LN4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -55448 for 660 contacts (-84.0/contact) +
2D Compatibility (PS) -10365 + (NN) -3333 + (LL) 192
1D Compatibility (HY) -8000 + (ID) 1650
Total energy: -78604.0 ( -119.10 by residue)
QMean score : 0.778
(partial model without unconserved sides chains):
PDB file :
Tito_1LN4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1LN4-query.scw
PDB file :
Tito_Scwrl_1LN4.pdb
: