Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | -MKNTKGKKI--TIIISIIILILVIATFSGYYYVKSQLEPKDEASKEKITVEIPAGSSISDISTILEDKKVINNASIFSFYVKYNNDTNLKAGNYELSPAMNTD---QIVKKMQEGKTVAPAKLVIPEGYTLDQIADRIVAYQPKLKKADVLKTMDDPEFVASMIKAYPETVTNDVLNKSIKHPLEGYLYPATYTFKGTDVSAEQIITEMVKATDVNIAKYRDELTKQKMSVHKFLTMSSIIEKEATENVDRKMIASVFYNRLAKDMRLQTDPTVLYALGEHKSKT--TYKDLEVDSPYNTYKNNGLPPGPISNSGDSSMEAALYPEKSDYLYFLANTKTGKVYFSKTLEEHNKLKEEHITKNN---- |
| 5AHR Chain:A ((1-343)) | SMTCPFYKKIPGTGFTVDAFQYGVVEGCTAYFLTHFHSDHYAGLSKHF---TFPVYCS-EITGNLLKNKLHVQEQYIHPL--PLDTECIVNGVKVVLLDANHCPGAVMILFYLPNGTVILHTG-----DFRADPSMERSLLADQKVHMLYLDTTYCSPEYTFPSQQEVIRFAINTAFEAVTLNP-HALVVCGTYS-----IGKEKVFLAIADVLGSKVG----------MSQEKYKTLQCLNIPEINSLITTDMCSSLVHLLPMMQIN-------FKGLQSHLKKCGGKYNQILAFRPTVIPQTKG----NISIYGIPYSEHSSYLEMKRFVQWLKPQKIIPTVNVGTWKSRSTMEKYFREWKLEAGY |
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General information:
TITO was launched using:
| RESULT:
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Template: 5AHR.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 28225 for 2518 contacts (11.2/contact) +
2D Compatibility (PS) -31623 + (NN) 5932 + (LL) 2508
1D Compatibility (HY) -10000 + (ID) 2550
Total energy: -7508.0 ( -2.98 by residue)
QMean score : 0.095
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