Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MFVDQVKIYVKAGNGGDGMVAFRREKFVPNGGPAGGDGGKGADVVFVVDEGLRTLVDFRFKRIFKAEHGEHGMSKSMHGRGAEDLVVKVPQGTIVKDIDTGEIIADLVAHGQRAVIAKAGRGGRGNKRFATPANPAPELSENGEPGQERNVQLELKVLADVGLVGFPSVGKSTLLSVVSAARPKIAAYHFTTIVPNLGMVDAGDGRSFVMADLPGLIEGASQGVG--LGHQFLRHIERTRVIVHVIDMSGSEGRVPYEDYMAINNELEQYNLRLMERPQII-VANKMDMPD---AEENLNEFKTKIAEDIPVFPISAVTKTGLRELLLAIA----DKLETTPEFPLNEILEQEDEDTVLYKYVAEEPDFEISREPDGTFVLSGAKIERLFTMTNFERDASISRFARQLRAMGVDEALRKRGAKDGDIVRLLDYEFEFMD |
| 3K53 Chain:A ((2-175)) | ------------------------------------------------------------------------------------------------------------------------------------------------------------VLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYRE-KEFLVVDLPGIYSLTAHSIDELIARNFILD-GNADVIVDIVDSTC-----------LMRNLFLTLELFEMEVKNIILVLNKFDLLKKKGAKIDIKKMRKELG--VPVIPTNAKKGEGVEELKRMIALMAEGKVTTNPIIP---------------------------------------------------------------------------------------------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3K53.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -96694 for 1250 contacts (-77.4/contact) +
2D Compatibility (PS) -18127 + (NN) -11823 + (LL) 15028
1D Compatibility (HY) -15600 + (ID) 2400
Total energy: -129616.0 ( -103.69 by residue)
QMean score : 0.398
|
|
|