Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKSKFFIGMMTFLLSLICLTGMKAEAKSVGDISPDDISPEISDNRFQSAEGKVLPNFEVDMSISDQNNGKLSIDEDFELTSDGDIILIGTVQGQYIQGTPILNENGQLNKIPNRDQGIIMRVDRTTKKVEWARVVNYEDGNYNSQYAADKWFSSYKSITTNSSKSTFYVGGEVVNYYGDSGGGSTLIVKSIDANGNFQIAHKSYVSYGVPSRSDLTYAYFMDIQMEGNTLTMSASARYAAQGKQFIRYTLEPASLSITKNEFNPLDNTFWAKYQRTDVLKVDNKGLMAYNADVNGANQLKMSIRESENNYKEITLFDSVPEILANSSPYIFMEDRGDGNVFVVMSTPTTWYIALVNIASEQVVETKKMTMNSSTTLNSVIYSEGKGLLLGGSTHAEESIFGSEPLNKNNGYYLALGNDLNVTDSQILRTNQHNSLTTIINGVGNKVDGFFSYDGLNNDGYIQNVEYPNTYDVNPNGAMIFAEFNLQPAPVLDTGNPILAFYQGERRADFDELEGVKAYSGIDSSDVTKSITKNTFDLYTVGVQQQLYQIEYLPGSGNKTTGTRNVQLIHPLETPKLEKSYADSHGAFKVGEVVPANAIHAFNGLDSANNVTYVVTAVDDEKITVDASIKRTEGTKTAVINKEITLMTSTADETAVIDVTSVALAAGKYTSLTDVRNEGHFHIYAETMDSVSIDPKYVKLTEDPENPVDWNAPGVYYVTASLDPASGYTAKDVKVSVAVVDVGSPKVISVNMKPYNPTTALVVAEDDINGAGVYKINWAIKDANGLIIQQGVEESGATIRVQTPVPIDLSTLNDGNYTLSVSAADRIGHTSEASEKAFTVDRQAPVVTADDKITYEINTKKTEEEFLNDVNVKTEAGAVIKTNFDTMVRMDSPGDYTVLVEATDAAGNQSDPIYVIVTVEDTVAPIISADEAISYNQGNIRTEALFLTDIHATTDEPATITSDFADQVKFDTPGVYAVTLKANDISGNQAIPRTVNVTIKDVTAPVITADEAIIYEKGITKSATDFLTDIHATTNDGSAITSNFATVVDLNTPGDYDVTLSSTDTGGNISDPVTITVTVRDTTPPVITADTTITYEKGTTKTAAAFLTDVNATTNDGSAVTSNFNPISLKQVGTYQVTLSSVDENGNYALPVKVTVVVQDTQKPVISSSATSITYERGEKKQETGFFLDLAIKTDDGTPVTSDFDTAVNLDTAGTYTVTLNSEDESGNKADPVTITVTVADTEKPIITADTTITYAKGTTKTVAQFLTDIHATTNDGSTIISNFDPTVLAQEGTYTVVLNAKDESNNEADPVTVTITVVDTKGPIINALNAITYERTINKNEADFLADIEATTDDGSTITTDFNSKDLDTVGTYIVTLNAEDASGNKATPVKVTIKVEDTIPPIITADQSITYERGITKTEQAFYTDIKAATSDNSPISSDFSKIDLTKTGNYEVLLRATDQSGNKALPLKINVLVQDTIAPVIKTTSREITAERGTPMTEQQLLAKIGANTDDGSKITTDYNPAIVNTSGDYLVHLYAVDAAGNQAIPVEITIHVKDTTAPIIKADKKISYPVGTVKTVTEFLQDIHATTDDGSKITTDFDPNMLKTPGKYTIHLNAVDADGNKAKT--IDVSLTVEEKVTPPKPPTPDDGGN--------NTNGSNGTNGSNTDITVNPTKQNTTATNESIPALGDTKSTIPVIVGMFLLATSLVLIRRK |
| 3MV8 Chain:D ((36-128)) | ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------QDPGKGPEFLFTLYSAGEEKEKERLKATLTKKESFLHITAPKPEDSATYLCAVQDLGTSGSRLTFGEGTQLTVNPNIQN---PDPAVYQLRDSKSS-------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3MV8.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 23605 for 333 contacts (70.9/contact) +
2D Compatibility (PS) -8660 + (NN) -3485 + (LL) 92332
1D Compatibility (HY) -2000 + (ID) 1350
Total energy: 100442.0 ( 301.63 by residue)
QMean score : 0.530
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