Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
---------MKKI--LIGGIRLYQKYISRFTPATCRFYPTCSAYGIE----AIQTHGALKGSYLAIRRISKCHPFHKGGLDFVPPKKDKNADSEHSCKVHHHH
1A8Y Chain:? ((127-235))
VELIEGERELQAFENIEDEIKLIGYFKNKDSEHYKAFKEAAEEFHPYIPFFATFDSKVAKKLTLKLNEIDFYEAFMEE-PVTIPDKPNSEEEIVNFVEEHRRS
General information:
TITO was launched using:
RESULT:
Template:
1A8Y.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -7419 for 572 contacts (-13.0/contact) +
2D Compatibility (PS) -8683 + (NN) 860 + (LL) -172
1D Compatibility (HY) -1200 + (ID) 550
Total energy: -17164.0 ( -30.01 by residue)
QMean score : 0.074
(partial model without unconserved sides chains):
PDB file :
Tito_1A8Y.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1A8Y-query.scw
PDB file :
Tito_Scwrl_1A8Y.pdb
: