Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEGVENKVIVLAGMIGAGKSSYT----------ELIANELGTKAFYESIKD--------NRILEMFYDDPKRWAFALQIYFLNTRFR----SIKAALTDQNN---VLDRSIYEDA-LFTQINFEEGNISEPEMDTYLDLLDNMMEELAYMPKKAPDLLIYLRGSLDTVLSRIALRGRPYEQIDDNPGL-LEYYKHLHSRYDSWFASYDKSETLVINIDEIDINKPNDADYVMQLIHEKLKR
4Q1C Chain:A ((40-246))
----RIKKISIEGNIAAGKSTFVNILKQLSEDWEVVPEPVARWS-------LTMEQKNGGNVLQMMYEKPERWSFTFQTYACLSRIRAQLASLNGKLKDAEKPVLFFERSVYSDRYIFASNLYESESMNETEWTIYQDWHDWMNNQFG--QSLELDGIIYLQATPETCLHRIYLRGRNEEQ-----GIPLEYLEKLHYKHESWLL----HRTLKTNFD-----------------------
General information:
TITO was launched using:
RESULT:
Template:
4Q1C.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -81772 for 1211 contacts (-67.5/contact) +
2D Compatibility (PS) -18230 + (NN) -7663 + (LL) 2744
1D Compatibility (HY) -14000 + (ID) 3050
Total energy: -121971.0 ( -100.72 by residue)
QMean score : 0.366
(partial model without unconserved sides chains):
PDB file :
Tito_4Q1C.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4Q1C-query.scw
PDB file :
Tito_Scwrl_4Q1C.pdb
: