Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIIFVWAQDRAGNIGKDNKMPWHLPGDLQFFKKTTTGKTLVMGRKTYESLGKALPNRKTIVLTRDQGLKLDDAEILHSKEAVLALAETGEPIYIVGGAEIYRLFMDVADQLIVTKIDAEFEADTAFPEVDWENFSEVAKEFHEKDEKNKYNYTFYTYERN
3JW5 Chain:A ((9-166))
-VSFMVAMDENRVIGKDNNLPWRLPSELQYVKKTTMGHPLIMGRKNYEAIGRPLPGRRNIIVTRNEGYHVEGCEVAHSVEEVFELCKNEEEIFIFGGAQIFDLFLPYVDKLYITKIHHAFEGDTFFPEMDMTNWKEVFVEKGLTDEKNPYTYYYHVYEK-
General information:
TITO was launched using:
RESULT:
Template:
3JW5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -88589 for 1170 contacts (-75.7/contact) +
2D Compatibility (PS) -17051 + (NN) -5167 + (LL) 128
1D Compatibility (HY) -18400 + (ID) 3700
Total energy: -132779.0 ( -113.49 by residue)
QMean score : 0.618
(partial model without unconserved sides chains):
PDB file :
Tito_3JW5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3JW5-query.scw
PDB file :
Tito_Scwrl_3JW5.pdb
: