Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LLYSLLANRAFLRLLFFG----NLLGAIYGY-IW-YLPQLQMTEPRF-WLF-VPDSPT-----AILFFTLALVAFLGKKHWPLMEALGFVCLVKYGLWAVGMNIFYMVDQGVLVWGSVVLILTHGFMAVE-----GILYAPFYRFRIGHFMIAAVWVF-HNDVIDYVFGQMPIYMGLEKYLPEIGYATFWL-TVLVLWFVYDKTIKNKHLTL-EFP-HDE
3IC6 Chain:A ((4-220))
LKPALPDYLGNIRIILTRTSHPANIGSAARAMKTMGLHRLTIVTPNLMATPMTENPPVFNPDDVQSFALPEESFILASGAADVLHNAEIVATLDEALADTTIACALTSRRRTAPLQTPRDLVPELLQAANRGEKVALVFGN-ETFGLSIEEVRACNRLMTING-NPDYFSLNLAQAVQVVCYEIFSQTDSPMTHLQ-----QHAATHEQIKGMLAHMESV
General information:
TITO was launched using:
RESULT:
Template:
3IC6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -155266 for 1247 contacts (-124.5/contact) +
2D Compatibility (PS) -18267 + (NN) 7345 + (LL) 1084
1D Compatibility (HY) 15200 + (ID) 700
Total energy: -150604.0 ( -120.77 by residue)
QMean score : -0.024
(partial model without unconserved sides chains):
PDB file :
Tito_3IC6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3IC6-query.scw
PDB file :
Tito_Scwrl_3IC6.pdb
: