Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | VNILHIEWKTRIKSLVVWAVVVIVILGVFMAFFPSMQSSGMQDLVNTKMNALPQDMMKILHMDSMADLTNIDAYFAYVF---------QYIFIAACVYAALIGAQALIKEET---DGTI---EFLYAQPITRS-----SLVFWKMIGNLLSFVAFW-VITFLASVALVLFLKPSGVDGGNLVMELVRVFSSELLVAAVFMSAGFMVSSVLRSAKQASPVALALVFLTYILGIMAGLNDKVDFFKYFSPINYAIPSEIMDKGITGTNALISCGVIVVMVAMTFVLYKKKDLKV------------ |
| 4NSD Chain:A ((15-349)) | -DRKVMEYENRIRAYST--------PDKIFRYFATLKVISEPGEAEVFMT--PEDFVRSITPNHLGLDQYIIKSIFYTLGECGLISFSDYIFLTTVLSTPQRNFEIAFKMFDLNGDGEVDMEEFEQVQSIIRSCSALTTYFFGADLKGKLTIKNFLEFQRKLQHDVLKLEFERHDPVDGRI---TERQFGGMLLAYSGVQSKKLTAMQRQLKKHFKEGKGLTFQEVENFFTFLKNINDVDTALSFYHMAGASLDKVTMQQVARTVAKVELSDHVCDVVFALFDCDGNGELSNKEFVSIMKQRLM |
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General information:
TITO was launched using:
| RESULT:
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Template: 4NSD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -188620 for 1708 contacts (-110.4/contact) +
2D Compatibility (PS) -26700 + (NN) -7144 + (LL) 2492
1D Compatibility (HY) -4000 + (ID) 2000
Total energy: -225972.0 ( -132.30 by residue)
QMean score : 0.138
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