Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
METVLQAKNVRKIYGSKGNVYTALENISIDIKEGEFTGIMGPSGAGKSTLLNVLSTIDKPTSGQIVISGQELENMNEQQMSTFRRDKLGFIFQDYNLLDTLTIRENIILPLALAKRPVKEMEEKLAIISEKFGITEILDKYPSEISGGQKQRTAASRAIITSPSLIFADEPTGALDSKSATNLLESLRDLNEQDKSTIMMVTHDAF-AASFCKRILFIKDGELYTEIYRGTKTRKEFFQKILDVLAKLGGDSDDVI
2D62 Chain:A ((12-221))
------------IWKRFGDV-TAVKDLSLEIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTRGQIYIEDNLVADPEKGVFVPPKERDVAMVFQSYALYPHMTVYDNIAFPLKLRKVPKQEIDKRVREVAEMLGLTELLNRKPRELSGGQRQRVALGRAIIRRPKVFLMDEPLSNLDAKLRVKMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNKGEL---------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2D62.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -85511 for 1631 contacts (-52.4/contact) +
2D Compatibility (PS) -22876 + (NN) -11075 + (LL) 3636
1D Compatibility (HY) -18800 + (ID) 3850
Total energy: -138476.0 ( -84.90 by residue)
QMean score : 0.438
(partial model without unconserved sides chains):
PDB file :
Tito_2D62.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2D62-query.scw
PDB file :
Tito_Scwrl_2D62.pdb
: