Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKVFITTGTEHYLRQLMANYTGGNVTLLQNFSQSLLYQESTGEKLFQEGAEYRVLQSSGSIKGFGVVVFEYIHLRDEEIPIFLQMYQRASLHF-SETPGLQSTKLTKAMNM-NKFLIISFWDSEVFFHDWKKSPLSKEITNIMRKNNTQSGFSHEDIYHYPEFSHDAK
3BM7 Chain:A ((18-100))
---------------------------------------------------------------QGMIGVVATLKVQPAKAAEFEKVFLDLAAKVKANEPGCLVYQLTRSKTEEGVYKVLELYASMDALKHHGGTDYFKAAGAAMGP-----------------------
General information:
TITO was launched using:
RESULT:
Template:
3BM7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -36773 for 490 contacts (-75.0/contact) +
2D Compatibility (PS) -8889 + (NN) -3818 + (LL) 5136
1D Compatibility (HY) -1600 + (ID) 450
Total energy: -46394.0 ( -94.68 by residue)
QMean score : 0.412
(partial model without unconserved sides chains):
PDB file :
Tito_3BM7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3BM7-query.scw
PDB file :
Tito_Scwrl_3BM7.pdb
: