Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MENERKRILELVKQGIISTEEALTLLENISKKEGKTAAKENIRRSAAPREEEQIEEETKEEPSYDYSKGWNNQGN-PYTPPKSRKRRPEPTPENHERDEEE----GGE-NSSKDREDSMRNMVNDLSQAGEKIGSFLNSAFKQVKDMPFPFLTS--TKIERDFIYH-----DTTLSILEFEIANGNIEFKPSDSND-IKVHAMIKLFKEYPEDEALKIFFDKTTLRVDEETLRFESKSKQIVTNLTVYL-----PRREYDYVSVKMLNGNFHMDELSGRDLFVKTTNGNISI-GTL-NA-TLA-EIE-SI-NGNVRIQNGEIRDVALKTFNGNVAVKGNYYSTNLQTKNGNVNYQLTGN-EATFLKAKTGAGNIDVVVPATIGVDGRFHTNLGKLLLDLKDAEILESKTESVSKSITFTKLPNAADSSLKIEAEATTGSVKIRDVK |
| 4H3W Chain:A ((38-350)) | -------------------------------------------------------------------ESWVAPLGMGYVT--SDDVVNVEVPSIREVDGAYVMIYDGEMIGSLRAASDVEIASEDIT--TGDIDGLFDGDFVLALTNPHITLSNVNASLDCSLSIEAENTSEATSSDFTLSTVSPNIWIGPLDPTDAFFVNELPGIVQIVPQI--------HLSLSADSQ---WTNAPADALSELRYAVELPLTPAPEFSAVSVERIEDAF--DEDFVDYIF---SDGSARIYGEVTNEMPFDMSIEMVIMDEN------------------NVPVDIQFPAQEV-GQSGEVIFEITEDMPM-------DARHIDLNLHLTGRDQGE---ALGQTTFNLLEGGI------------------------------------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 4H3W.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 102149 for 1612 contacts (63.4/contact) +
2D Compatibility (PS) -26449 + (NN) -3748 + (LL) 12776
1D Compatibility (HY) 9600 + (ID) 400
Total energy: 93928.0 ( 58.27 by residue)
QMean score : -0.058
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