Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDQIISALIFPCLLVILFARITYNRYVGLLL-------------MVILIAASAKLGYTSSMWLIIIDAFSMTI-------GFVLATYMLRRLKKSGSDF-----------
2B8A Chain:A ((1-110))
MSRSNRQKEYKCGDLVFAKMKGYPHWPARIDEMPEAAVKSTANKYQVFFFGTHETAFLGPKDLFPYEESKEKFGKPNKRKGFSEGLWEIENNPTVKASGYQSSQKKSCAE
General information:
TITO was launched using:
RESULT:
Template:
2B8A.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -86730 for 497 contacts (-174.5/contact) +
2D Compatibility (PS) -8191 + (NN) 53 + (LL) 0
1D Compatibility (HY) 800 + (ID) 300
Total energy: -94368.0 ( -189.88 by residue)
QMean score : 0.133
(partial model without unconserved sides chains):
PDB file :
Tito_2B8A.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2B8A-query.scw
PDB file :
Tito_Scwrl_2B8A.pdb
: