Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-MRKVGIFPSMIILFTVGISAVLYPLLPSEVAVHFGTDFSPDMFMQKWLGLILIPFLMIMFTGTEYYGKEKVNQESLLEFEY--------CFRLLLVLLTIIQMSIIVYALGYDIPTGRFSLVTAGAFMFVVAAYIQYSKKLFKFLTMI--GFKKI---DAWSRNLLRKI--TTVTLNIAGTICFILALFMRNDPSYLMLAMLMTMCVIVVGSGVYLNKK
4QW2 Chain:A ((3-202))
EELVVEVRGSNGAFYKAFVKDVH----EDSITVAFENNWQPD---------RQIPFHDVRFPPPVGYNKD-INESDEVEVYSRANEKEPCCWWLAKVRMIKGEFYVIEYA-----ACTYNEIVTIERLRSVNPNKPATKDTFHKIKLDVPEDLQQMCAKEAAHKDFKKAVGAFSVTYDPENYQLVILSI---NEVTSKRAHMLIDMHFRSLRTKLSLIMR
General information:
TITO was launched using:
RESULT:
Template:
4QW2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -201889 for 1217 contacts (-165.9/contact) +
2D Compatibility (PS) -19419 + (NN) -1449 + (LL) 2100
1D Compatibility (HY) -4000 + (ID) 1750
Total energy: -226407.0 ( -186.04 by residue)
QMean score : 0.207
(partial model without unconserved sides chains):
PDB file :
Tito_4QW2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4QW2-query.scw
PDB file :
Tito_Scwrl_4QW2.pdb
: