Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LKLVLMGLPGAGKGTQAEQIVEKYNIPHISTGDMFRAAMKNNTELGRKAKSFMDNGDLVPDEVTNGIVRERLSEDDAKDGFLLDGFPRTVEQAQELENILSDLGTELDAVINIDVEKDVLMKRLTGRWICRTCGKTYHEIYNPPKVPGKCDLDGGELYQRDDDKKETVEKRLNVNMKQTKPLLDFYSEKGKLHNINGEQEIKDVFVDVEKILASF
4MKG Chain:A ((1-215))
MNIVLMGLPGAGKGTQAERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTIGIVRERLSKSDCERGFLLDGFPRTVAQAEALEEILEEMGRPIDYVINIQVDKEELMERLTGRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVTKRLEVNMKQTAPLLAFYDSKEVLVNVNGQQDIQDVFADVKVILGGL
General information:
TITO was launched using:
RESULT:
Template:
4MKG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -61849 for 1689 contacts (-36.6/contact) +
2D Compatibility (PS) -23514 + (NN) -15394 + (LL) 0
1D Compatibility (HY) -24400 + (ID) 7350
Total energy: -132507.0 ( -78.45 by residue)
QMean score : 0.597
(partial model without unconserved sides chains):
PDB file :
Tito_4MKG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4MKG-query.scw
PDB file :
Tito_Scwrl_4MKG.pdb
: