Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MADRNQRKVYTGRVVSDKMDKTITVVVETYKKHGLYGKRVKYSKKFKAHDENNIAKTGDVVRISETRPLSATKHFRLLEVVEEAVII
1HNW Chain:Q ((3-80))
------KKVLTGVVVSDKMQKTVTVLVERQFPHPLYGKVIKRSKKYLAHDPEEKYKLGDVVEIIESRPISKRKRFRVLRLVESG---
General information:
TITO was launched using:
RESULT:
Template:
1HNW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -5963 for 482 contacts (-12.4/contact) +
2D Compatibility (PS) -8258 + (NN) -402 + (LL) 1016
1D Compatibility (HY) -7600 + (ID) 2200
Total energy: -23407.0 ( -48.56 by residue)
QMean score : 0.467
(partial model without unconserved sides chains):
PDB file :
Tito_1HNW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1HNW-query.scw
PDB file :
Tito_Scwrl_1HNW.pdb
: