Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSIPSF------LKLVEIQTKIASVFPFML-GTLFVVYQYDMFKPINTLIIF----------GSMLIFDLTTTAINNYMD--YRKATDNHDYD---------YRTTSNVIGQEQIPVRTVIITIFL--MFFIATGLGV---WLVFRTDLLVLL-IGFVCFCIGILYTFGPVPLSRMPLGEIFSGVTMGFGIFFLAVYVNAYDAGIANL-----LWQGEMVTIQFNLIEIIRIGVVSLPCI-FTIANIM----------------LANNLCDLDEDIRNHRYTLPYYIGRKMGVLLFNTLYY------ASFLAVVVSVAINFLHPIMLLSLITIYPVYRNLV---KF----NKEQVKSKTFVIGI----------RNFVLINATLTILMAVSVVLQQLT------------------- |
| 4R2F Chain:A ((38-431)) | GAIKFWDMPWATPAYNDAAKKIAEGFSGANSKATYQIIQWNNFYQTFSSAIASKTGPAVSTGGGFQAFQFEEQGQIAYADKVIEKLKSNGQFDDFLPGVVEPFKTSKGYVA---VPWQLDIRPLWYRKSLFEKAGVGVPTDWASLLEAGKKLKGVGAVGFATG-------------------SGAGNNIGNHLMIMMMLNNGGGVFTKDGELDVLNDRNVEAVEFLLELVSNGVIDPAAVSYTTDNLNAQWKDSKAAYGMLTLGVPERVGDTSGDIVVAS-PIAGPHGDKAALIFPNNIMMYTNTPSQEASEEFVVYYLGKLKELWQQKLMNALPVFKSITEMPEFTADPNNVKIVNEYVPIAKTFASQGTALSANLAALDGGQALNQFTQTVLTGKTDAKSALTAFDTGLKSVLKK |
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General information:
TITO was launched using:
| RESULT:
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Template: 4R2F.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -304907 for 2200 contacts (-138.6/contact) +
2D Compatibility (PS) -30946 + (NN) -7825 + (LL) 1592
1D Compatibility (HY) -6000 + (ID) 2850
Total energy: -350936.0 ( -159.52 by residue)
QMean score : 0.228
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