Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDLVQFLKKGMVWVQSDIEKQEDLFQMVAESGKSEGYVTDDFLTRLTDREQTFPTGLKLDGYGVALPHTDPECVTEQFIAVITVKDGIPFKLMEDAG---QTVEANLIFVLGLNEPHSQLAVLQQLMGTIQDKDNVAALLRAKDEDEVKQILETIAV
4M62 Chain:T ((21-151))
-------------------SQNDIIKALASPLINDGMVVSDFADHVITREQNFPTGLPVEPVGVAIPHTDSKYVRQNAISVGILAEPVNF---EDAGGEPDPVPVRVVFMLALGNWFDITNVLWWIMDVIQDEDFMQQLLVMND-DEIYQSIYT---
General information:
TITO was launched using:
RESULT:
Template:
4M62.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -75080 for 957 contacts (-78.5/contact) +
2D Compatibility (PS) -14055 + (NN) -6326 + (LL) 3048
1D Compatibility (HY) -12400 + (ID) 2400
Total energy: -107213.0 ( -112.03 by residue)
QMean score : 0.597
(partial model without unconserved sides chains):
PDB file :
Tito_4M62.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4M62-query.scw
PDB file :
Tito_Scwrl_4M62.pdb
: