Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTLYIIANPHAGNKNASTIVGKIQELYHTED--ISVFYTEQKDDEKKQVINILRSFKESDHLMIIGGDGTLSKVMTYLP---QHIPCAYYPVGSGNDFARALKIPN-LKETLTAIQTERLKEINCFIYDKGLILNSLDLGFAAYVVWKASNSKIKNILNRYRLGKITYIVIAIKSLLHSSKVQVLVEGETGQQIKLNDLYFFALANNTYFGGGITIWPKASALTAELDMVYAKGHTFLKRLSILLSLVFKRHTTSKSIKHQTFKAMTVYFPKNSLIEIDGEIVELDQISLKCQKRYLYM |
| 3S40 Chain:A ((7-293)) | EKVLLIVNPKAGQGDLHTNLTKIVPPLAAAFPDLHILHTKEQGDATKYCQEF---ASKVDLIIVFGGDGTVFECTNGLAPLEIRPTLAIIPGGTCNDFSRTLGVPQNIAEAAKLITKEHVKPVDVAKANGQHFLNFWGIG------------------------KIGYYLSTI------ETFPVKIT-YDGQVYE-DEAVLVMVGNGEYLGGIPSFIPNVKCDDGTLDIFVVKSTGIQAFKDYIGKKLFEDS-NENDIFHVKAKSIHIETEEEKEVDTD--SSLHTPCQIELLQGHFTM |
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General information:
TITO was launched using:
| RESULT:
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Template: 3S40.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -115641 for 2101 contacts (-55.0/contact) +
2D Compatibility (PS) -26956 + (NN) -1170 + (LL) 2612
1D Compatibility (HY) -6800 + (ID) 2350
Total energy: -150305.0 ( -71.54 by residue)
QMean score : 0.488
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