Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKKVLTFLLCSLYFVSIPAISTEEPLTLSQNRRYALTQTVVDKEMYFDAIPERPTTKIEISSFQDEALTITGETLVPNTLLSIVSLTINSNGIPVFTLSNGQFIKASREAIFNDLVSKQQSVSLDYWLKPSFVTYEAPYTNGVSEVKNNLKPYSRVHLVEQAETEHGIYYKTDSGFWISVEDLSVADNRMAKVQEVLLEKYNKDKYGIYIKQLNTQTVAGINIDRSMYSASIAKLATLYASQEQVKLGKLSLDSKFEYKDNVNQFPNSYDPSGSGKLEKKADHKLYTVKELLEATAKESDNVATNMLGYYVNN--QYDSMFQTQVDTISG--------MHWDMKKRQ--ISPQAAGKMMEAIYYQNGDIVNYLSKTDFD--------NTRIPKNIP--VKVAHKIGDAYDY--KHDAAIVYAE---QPFIMIIFTDKSSYDDITKIADDVYQVLK |
| 1KGE Chain:A ((36-272)) | ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LEKKYNAH-IGVYALDTKSGKEVKFNSDKRFAYASTSKAINSAILLEQVPYNKLNKKVHINKDDIV-----AYSPI----LEKYVGKDI-TLKALIEASMTYSDNTANNKIIKEIGGIKKVKQRLKELGDKVTNPVRYEIELMYYSPKSKKDTSTPAAFGKTLNKL-IANGKLSKENKKFLLDLMLNNKSGDTLIKDGVPKDYKVADKSGQAITYASRNDVAFVYPKGQSEPIVLVIFTNKDNKSDKPNDKLISETAKS |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 1KGE.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -57701 for 1629 contacts (-35.4/contact) +
2D Compatibility (PS) -21345 + (NN) 1150 + (LL) 14328
1D Compatibility (HY) -7600 + (ID) 3200
Total energy: -74368.0 ( -45.65 by residue)
QMean score : 0.400
|
|
|