Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | -MKKANQLIAAIFDVNNTFMQGCNV--VFDLALLNLLFMITCLPLVTIGAAKISLYR--------TLWQKLEGDQTNLLILYIKH-----LKKEWFQGMLLG--------------LVELSILVVIIFDLTILHYQIGFIVSFLKITCYAFLLLTVMTSIYLFPMAARYEMSLLDTVKKSFIMACLNLKWTGVLMFL-----------LIMTWFIMVQSSLLFMLTVSAIFIFAYTAFAYFKIIILQKQFAYFSKQQGDYQ----------------------------------------------- |
| 3PVT Chain:A ((1-304)) | MRSTQEERFEQRIAQETAIEPQDWMPDAYRKTLIRQIGQHAHSEIVGMLPEGNWITRAPTLRRKAILLAKVQDEAGHGLYLYSAAETLGCAREDIYQKMLDGRMKYSSIFNYPTLSWADIGVIGWLVDGAAIVNQVALCRTSYGPYARAMVKICKEESFHQRQGFEACMALAQGSEAQKQMLQDAINRFWWPALMMFGPNDDNSPNSARSLTWKIKRFT----NDELRQRFVDNTVPQVEMLGMTVPDPDLHFDTESGHYRFGEIDWQEFNEVINGRGICNQERLDAKRKAWEEGTWVREAALAHAQK |
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General information:
TITO was launched using:
| RESULT:
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Template: 3PVT.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -228844 for 1594 contacts (-143.6/contact) +
2D Compatibility (PS) -22422 + (NN) -11301 + (LL) 456
1D Compatibility (HY) 400 + (ID) 1350
Total energy: -263061.0 ( -165.03 by residue)
QMean score : 0.260
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