Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGRSLKKGPFVDEHLMKKVEAQANDEKKKVIKTWSRRSTIFPSFIGYTIAVYDGRKHVPVYIQEDMVGHKLGEFAPTRTYKGHAADDKKTRR
2F4V Chain:S ((2-85))
-PRSLKKGVFVDDHLLEKVLELNAKGEKRLIKTWSRRSTIVPEMVGHTIAVYNGKQHVPVYITENMVGHKLGEFAPTRTYRGHGK-------
General information:
TITO was launched using:
RESULT:
Template:
2F4V.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -42501 for 494 contacts (-86.0/contact) +
2D Compatibility (PS) -9376 + (NN) -4198 + (LL) 436
1D Compatibility (HY) -9600 + (ID) 2800
Total energy: -68039.0 ( -137.73 by residue)
QMean score : 0.632
(partial model without unconserved sides chains):
PDB file :
Tito_2F4V.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2F4V-query.scw
PDB file :
Tito_Scwrl_2F4V.pdb
: