Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNLLIMGLPGAGKGTQAAKIVEEFGVAHISTGDMFRAAMANQTEMGRLAKSYIDKGELVPDEVTNGIVKERLAEDDIAEKGFLLDGYPRTIEQAHALDATLEELGLRLDGVINIKVDPSCLIERLSGRIINRKTGETFHKVFNPP-----VDYKEEDYYQREDDKPETVKRRLDVNIAQGEPILEHYRKLGLVTDIEGNQEITEVFADVEKALLELK
1ZIP Chain:A ((1-212))
MNLVLMGLPGAGKGTQAEKIVAAYGIPHISTGDMFRAAMKEGTPLGLQAKQYMDRGDLVPDEVTIGIVRERLSKDD-CQNGFLLDGFPRTVAQAEALETMLADIGRKLDYVIHIDVRQDVLMERLTGRRICRNCGATYHLIFHPPAKPGVCDKCGGELYQRADDNEATVANRLEVNMKQMKPLVDFYEQKGYLRNINGEQDMEKVFADIRELLGGLA
General information:
TITO was launched using:
RESULT:
Template:
1ZIP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -70904 for 1610 contacts (-44.0/contact) +
2D Compatibility (PS) -22635 + (NN) -10901 + (LL) 204
1D Compatibility (HY) -22800 + (ID) 5600
Total energy: -132636.0 ( -82.38 by residue)
QMean score : 0.532
(partial model without unconserved sides chains):
PDB file :
Tito_1ZIP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1ZIP-query.scw
PDB file :
Tito_Scwrl_1ZIP.pdb
: