Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ------------MKNMMKYISELTTLIALAGLMVIITLINPNFLTTNNLLNLLLQVTANGFIAFGM--TFVILTGG------I-DLSVGSILALSSAL-TAGLIGHG------------VPVGIAIVLSVALGGILGMLNGLFISYGKLAPFIVTL-ATMTIFR------GATLVYSNGNPITAGLSDSFLFQFLGQGYIVGIPFP-----------VIL-MFLTFI-ILYILLHKTAFGKSVYALGGNEKAAYISGIKLNKVKII-IYTISGI---------------MASISGLIITSRLSSAQP-TAGASYEMDAIAAVVLGGTSLSGGKGRIIGTLIGALIIGVLN-NG-LNIIGVS---------AFWQQV-VKGIVILMAVLLDRFKVAK---------------------------------------------------------------------------------- |
| 4OY2 Chain:A ((10-502)) | NLNIQHSQPAINLQSPFYKVAVPRYQLRHFHRENFGSHIRPGTKIVFSKLKARKRKRDKGKDVKESFSTSQDLTIGDTAPVYLMEYSEQTPVALSKFGMANKLINYYRKANEQDTLRPKLPVGETHVLGVQDKSPFWNFG--FVEPGHIVPTLYNNMIRAPVFKHDISGTDFLLTKSSGF----GISNRFYLRNINHLFTVGQTFPVEEIPGPNSRKVTSMKATRLKMIIYRILNHNHSKAISIDPIAKHFPDQDYGQNRQKVKEFMKYQRDGPEKGLWRLKDDEKLLDNEAVKSLITPEQISQVESMSQGLQFQEDNEAYNF--DSKLKSLEENLLPWNITKNFINSTQMRAMIQIHGVGDPTGCGEGFSFLKTSMKHSYNVAQQQKAYDEEIAKTWYTHTKSLSISNPFEEMTNPDEINQTNKHVKTDRDDKKILKIVRKKRDENGIIQRQTIFIRDPRVIQGYIKIKEQDKEDVN |
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General information:
TITO was launched using:
| RESULT:
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Template: 4OY2.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -126001 for 1795 contacts (-70.2/contact) +
2D Compatibility (PS) -30445 + (NN) 16329 + (LL) 268
1D Compatibility (HY) 25600 + (ID) 950
Total energy: -115199.0 ( -64.18 by residue)
QMean score : -0.120
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