Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKESFKLIATAAAGLEAIVGREIRNLGIDCQVENGRVRFHGDIKTIIETNLWLRAADRIKIIVGEFPARTFEELFQGVYGLDWENYLPLGAKFPIAKAKCVKSKLHNEPSVQAISKKAVAKKLQKVFHRPEGVPLQENGAEFKIEVSILKDKATVMIDTTGSSLFKRGYRAEKGGAPIKENMAAAIIQLSNWFPDKPLIDPTCGSGTFCIEAAMIGMNIAPGFNRD-FAFEAWPWVDQSQVQKVRDEAESKAN---YDIDLDISGFDLDGRMVEIARKNAEEAGLGDVIKLKQMRLQDLKTDKI----NGVIISNPPYGERLLDDKAVDILYNEMGQTFA-PLKTWSKFILTSDEGFEKKYGSQADKKRKLYNGTLKVDLYQYYGERVRRQVK |
| 3V8V Chain:B ((25-378)) | --------------------------AVECQVVQGGVHFKGDTRLVYQSLMWSRLASRIMLPLGEC--YSDLDLYLGVQAINWTEMFNPGATFAVH--------RNSQYGAMKVKDAIVDAFTR---PRPN---VDRDAPDIRVNVW-------IALDLSGDGLHLRGYRD----APIKETLAAAIVMRSGWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHFYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQL-TNPLPKGPYGTVLSNPPY-----SEPALIALHSLLGRIMKNQFGGWNLSLFSASPDLLSCLQLRADKQYKAKNGPLDCVQKNYHVAESEDYTN |
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General information:
TITO was launched using:
| RESULT:
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Template: 3V8V.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -117808 for 2466 contacts (-47.8/contact) +
2D Compatibility (PS) -33655 + (NN) -10870 + (LL) 4424
1D Compatibility (HY) -18400 + (ID) 5150
Total energy: -181459.0 ( -73.58 by residue)
QMean score : 0.529
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