Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MANKQDLIAKVAEATELTKKDSAAAVDAVFAAVADYLAEGEKVQLIGFGNFEVRERAARKGRNPQTGAEIEIAASKVPAFKAGKALKDAVK
2IIF Chain:A ((62-136))
----------------LSKRDAKELVELFFEEIRRALENGEQVELSGFGNFDLRDKNQRPGRNPKTGEDIPITARRVVTFRPGQKLKSRVE
General information:
TITO was launched using:
RESULT:
Template:
2IIF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 4950 for 370 contacts (13.4/contact) +
2D Compatibility (PS) -7895 + (NN) -165 + (LL) 1708
1D Compatibility (HY) -6000 + (ID) 1600
Total energy: -9002.0 ( -24.33 by residue)
QMean score : 0.420
(partial model without unconserved sides chains):
PDB file :
Tito_2IIF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2IIF-query.scw
PDB file :
Tito_Scwrl_2IIF.pdb
: