Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIAIPAFALSVLSGQFIGQKLADSLVYQASRTVRADFMK-GFGNMQLGSD---------SDTDMFMQTKCTSEA
2Y5P Chain:A ((3-74))
--MVYTVSYDVDGTVIKTKVEAGTRITAPKPPTKQGYVFKGWYTEKNGGHEWNFNTDYMSGNDFTLYAVFKAET
General information:
TITO was launched using:
RESULT:
Template:
2Y5P.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -2570 for 328 contacts (-7.8/contact) +
2D Compatibility (PS) -6540 + (NN) 1319 + (LL) 412
1D Compatibility (HY) -1200 + (ID) 350
Total energy: -8929.0 ( -27.22 by residue)
QMean score : 0.148
(partial model without unconserved sides chains):
PDB file :
Tito_2Y5P.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2Y5P-query.scw
PDB file :
Tito_Scwrl_2Y5P.pdb
: