Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSYLTFKHVDFKTDDKLVLNDINFAIDEGDFVSIVGPSGSGKSTVLKLASGLMSPTAGHIFFDGKDLNQLEPIESRKMISYCFQT----PHLFGNTVEDNISFPYHIRHEK--VDYRRVDDLFQRFEMDQSYLKQDVKKLSGGEKQRIALIRQLLFEPKVLLLDEVTSALDNHNKAIVEKVIKSLHDK-GITILWITHDEEQSRRFANKVLKVVNGSIEAMEVIK
3PV0 Chain:A ((2-212))
-ASVQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAE--RGVGMVFQSYALYPHL---SVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAH-LLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPL
General information:
TITO was launched using:
RESULT:
Template:
3PV0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -124465 for 1582 contacts (-78.7/contact) +
2D Compatibility (PS) -22346 + (NN) -9545 + (LL) 132
1D Compatibility (HY) -16800 + (ID) 3700
Total energy: -176724.0 ( -111.71 by residue)
QMean score : 0.449
(partial model without unconserved sides chains):
PDB file :
Tito_3PV0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3PV0-query.scw
PDB file :
Tito_Scwrl_3PV0.pdb
: