Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTLLEKINETRDFLQAKGVTAPEFGLILGSGLGELAEEIENPIVVDYADIPNWGQSTVVGHAGKLVYGDLSGRKVLALQGRFHFYEGNTMEIVTFPVRIMRALACHSVLVTNAAGGI--GYGPGTLMLIKDHINV---IGTNPLIGENLEEFGPRFPDMSDAYTATYRQKAH----QIAEKQNIKLEEGVYLGVSGPTYETPAEIRAFQTMGAQAVGMSTVPEVIVAAHSGLKVLGISAITN---FAAGFQSELNHEEVVEVTQRIKEDFKGLVKSLVAEL
2QPL Chain:A ((6-280))
----EDYQDTAKWLLSHTEQRPQVAVICGSGLGGLVNKLTQAQTFDYSEIPNFPE----GHAGRLVFGILNGRACVMMQGRFHMYEGYPFWKVTFPVRVFRLLGVETLVVTNAAGGLNPNFEVGDIMLIRDHINLPGFSGENPLRGPNEERFGVRFPAMSDAYDRDMRQKAHSTWKQMGEQR--ELQEGTYVMLGGPNFETVAECRLLRNLGADAVGMSTVPEVIVARHCGLRVFGFSLITNKVIMDY------------EAGKQAAQKLEQFVSLLMASI
General information:
TITO was launched using:
RESULT:
Template:
2QPL.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -157598 for 2052 contacts (-76.8/contact) +
2D Compatibility (PS) -25853 + (NN) -3846 + (LL) 2032
1D Compatibility (HY) -26400 + (ID) 6000
Total energy: -217665.0 ( -106.07 by residue)
QMean score : 0.584
(partial model without unconserved sides chains):
PDB file :
Tito_2QPL.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2QPL-query.scw
PDB file :
Tito_Scwrl_2QPL.pdb
: