Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEIKEYENNPYHLAQLVDLINYCQNIEAKLDIKMAEQDDIFQIENYYQNRKGQFWIALENEKVVGSIALLRID--------DKTAVLKKFFTYPKYRGNPVRLGRKLFERFMLFARASKFTRIVLDTPEKEKRSHFFYENQGFKQITRDELDVDYIFPDRDSRIYVKLLD
3JVN Chain:A ((3-136))
--PVIRRAKEIDLYCLNSLMYKLHDEHHQQCPD------EKSIARYLDDPECMVYVAEMDDVIIGFITGHFCELISTVSKLVMMATIDELYIEKEYRRE--GVAEQLMMRIEQELKDYGVKEIFVEVW--NKGA------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3JVN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -53447 for 785 contacts (-68.1/contact) +
2D Compatibility (PS) -12135 + (NN) -3653 + (LL) 3380
1D Compatibility (HY) -4400 + (ID) 750
Total energy: -71005.0 ( -90.45 by residue)
QMean score : 0.654
(partial model without unconserved sides chains):
PDB file :
Tito_3JVN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3JVN-query.scw
PDB file :
Tito_Scwrl_3JVN.pdb
: