Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSRYTGPSWKQSRRLGLSLTGTGKE-------LARRNYVPGQHGPNNRSKLSEYGLQLAEKQKLRFSYGLGEKQFRNLFVQATKAKEGTLGFNFMVLLERRLDNVVYRLGLATTRRQARQFVNHGHILVDGKRVDIPSYRVTPGQVISVREKSMKVPAILEAVEATLGRPA--FVSFDAEKLEGSLTRLPERDEINPEINEALVVEFYNKML
2UUA Chain:D ((2-209))
-GRYIGPVCRLCRREGVKLYLKGERCYSPKCAMERRPYPPGQHGQKRARRPSDYAVRLREKQKLRRIYGISERQFRNLFEEASK-KKGVTGSVFLGLLESRLDNVVYRLGFAVSRRQARQLVRHGHITVNGRRVDLPSYRVRPGDEIAVAEKSRNLELIRQNLEAMKGRKVGPWLSLDVEGMKGKFLRLPDREDLALPVNEQLVIEFYSR--
General information:
TITO was launched using:
RESULT:
Template:
2UUA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -54802 for 1461 contacts (-37.5/contact) +
2D Compatibility (PS) -21603 + (NN) -13716 + (LL) 736
1D Compatibility (HY) -15200 + (ID) 5150
Total energy: -109735.0 ( -75.11 by residue)
QMean score : 0.542
(partial model without unconserved sides chains):
PDB file :
Tito_2UUA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2UUA-query.scw
PDB file :
Tito_Scwrl_2UUA.pdb
: